Structure‑based designing efficient peptides based on p53 binding site residues to disrupt p53‑MDM2/X interaction

Structure‑based designing efficient peptides based on p53 binding site residues to disrupt p53‑MDM2/X interaction


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دانشگاه علوم پزشکی تبریز
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نویسندگان: الناز مهدی زاده اقدم

کلمات کلیدی: MDM2, MDMX, p53, rational peptide design, umbrella sampling

نشریه: 31125 , 11449 , 10 , 2020

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نویسنده ثبت کننده مقاله الناز مهدی زاده اقدم
مرحله جاری مقاله تایید نهایی
دانشکده/مرکز مربوطه مرکز تحقیقات پزشکی مولکولی
کد مقاله 72837
عنوان فارسی مقاله Structure‑based designing efficient peptides based on p53 binding site residues to disrupt p53‑MDM2/X interaction
عنوان لاتین مقاله Structure‑based designing efficient peptides based on p53 binding site residues to disrupt p53‑MDM2/X interaction
ناشر 3
آیا مقاله از طرح تحقیقاتی و یا منتورشیپ استخراج شده است؟ خیر
عنوان نشریه (خارج از لیست فوق)
نوع مقاله Original Article
نحوه ایندکس شدن مقاله ایندکس شده سطح یک – ISI - Web of Science
آدرس لینک مقاله/ همایش در شبکه اینترنت

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MDM2 and MDMX are known as overexpressed oncoproteins in several wild-type p53 cancer cells. The development of potent and dual antagonist peptides for p53-MDM2/X is a continuous challenge. In this study, we intended to investigate the pivotal structural points respecting the development of potent and dual inhibitors of MDM2/X. Correspondingly, MD simulation was performed on the experimentally confirmed peptides, comprising p53, pDI, pDIQ, PMI, and computationally screened mutant pDI and pDIQ. A follow-up secondary structure analysis showed the last three C-terminal residues provide the helicity reservation of peptides bound to MDM2/X. Furthermore, a delicate residue-residue examination displayed Met 11 and Ser12 in the modified peptides contribute significantly to dual inhibition of MDM2/X. Additionally, the peptides_MDM2/X complexes’ ΔGbinding extracted by the umbrella sampling method were in agreement with the pattern of their experimental affinity values. It was concluded the screened pDI mutants were considered as suitable anti-MDM2/X peptides, and the data obtained could be exploited as the theoretical structure-based guide for rational peptide design. Taking account of results, the suitable C-terminal residues of p53-based peptides especially Met11, and Ser12, as well as higher umbrella sampling, generated ΔGbinding to MDM2/X would be considered as the positive structural markers of a promising anti-cancer agent.

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نویسنده نفر چندم مقاله
الناز مهدی زاده اقدمسوم

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s41598-020-67510-8.pdf1399/04/206678936دانلود