Alignment independent 3D-QSAR studies and molecular dynamicssimulations for the identification of potent and selective S1P1receptoragonists

Alignment independent 3D-QSAR studies and molecular dynamicssimulations for the identification of potent and selective S1P1receptoragonists


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دانشگاه علوم پزشکی تبریز
دانشگاه علوم پزشکی تبریز

نویسندگان: علی اکبر علیزاده , بهزاد جعفری , سیاوش دستمالچی

کلمات کلیدی: Sphingosine 1-phosphateMolecular docking3D-QSARMolecular dynamics simulationMultiple sclerosis

نشریه: 18104 , 107459 , 94 , 2020

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نویسنده ثبت کننده مقاله سیاوش دستمالچی
مرحله جاری مقاله تایید نهایی
دانشکده/مرکز مربوطه مرکز تحقیقات بیوتکنولوژی(زیست فناوری)
کد مقاله 71027
عنوان فارسی مقاله Alignment independent 3D-QSAR studies and molecular dynamicssimulations for the identification of potent and selective S1P1receptoragonists
عنوان لاتین مقاله Alignment independent 3D-QSAR studies and molecular dynamicssimulations for the identification of potent and selective S1P1receptoragonists
ناشر 3
آیا مقاله از طرح تحقیقاتی و یا منتورشیپ استخراج شده است؟ بلی
عنوان نشریه (خارج از لیست فوق)
نوع مقاله Original Article
نحوه ایندکس شدن مقاله ایندکس شده سطح یک – ISI - Web of Science
آدرس لینک مقاله/ همایش در شبکه اینترنت

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Sphingosine 1-phosphate type 1 (S1P1) receptors are expressed on lymphocytes and regulate immune cells trafficking. Sphingosine 1-phosphate and its analogues cause internalization and degradation of S1P1 receptors, preventing the auto reactivity of immune cells in the target tissues. It has been shown that S1P1 receptor agonists such as fingolimod can be suitable candidates for treatment of autoimmune diseases. The current study aimed to generate GRIND-based 3D-QSAR predictive models for agonistic activities of 2-imino-thiazolidin-4-one derivatives on S1P1 to be used in virtual screening of chemical libraries. The developed model for the S1P1 receptor agonists showed appropriate power of predictivity in internal (r2acc 0.93 and SDEC 0.18) and external (r2 0.75 and MAE (95% data), 0.28) validations. The generated model revealed the importance of variables DRY-N1 and DRY-O in the potency and selectivity of these compounds towards S1P1 receptor. To propose potential chemical entities with S1P1 agonistic activity, PubChem chemicals database was searched and the selected compounds were virtually tested for S1P1 receptor agonistic activity using the generated models, which resulted in four potential compounds with high potency and selectivity towards S1P1 receptor. Moreover, the affinities of the identified compounds towards S1P1 receptor were evaluated using molecular dynamics simulations. The results indicated that the binding energies of the compounds were in the range of −39.31 to −46.18 and −3.20 to −9.75 kcal mol−1, calculated by MM-GBSA and MM-PBSA algorithms, respectively. The findings in the current work may be useful for the identification of potent and selective S1P1 receptor agonists with potential use in diseases such as multiple sclerosis.

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نویسنده نفر چندم مقاله
علی اکبر علیزادهاول
بهزاد جعفریدوم
سیاوش دستمالچیسوم

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JMGM_2020.pdf1398/11/143747078دانلود